PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X4KHC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 210aa    MW: 23550.7 Da    PI: 8.7922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X4KHCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164665120
                 EEETTTTEEESSHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                 ++Cp C k+F+r  n++ H+
  Aradu.X4KHC 46 FSCPVCCKTFNRYNNMQMHM 65
                 89*****************9 PP

2zf-C2H215.45.1e-05130152123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Aradu.X4KHC 130 FMCRKCGKAFAVRGDWRTHEKNC 152
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-64665IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.644673IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-74668No hitNo description
SMARTSM003550.584668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-7125150No hitNo description
Gene3DG3DSA:3.30.160.604.9E-6126150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549130150IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASVLSEKEH GGGEDSGGGG STGNKVNKGQ YWIPTPSQIL IGPTQFSCPV CCKTFNRYNN  60
MQMHMWGHGS QYRKGPESLR GTQPTGMLRL PCYCCAPGCR NNIDHPRSKP LKDFRTLQTH  120
YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGSG  180
HAAYGIDGFE EDDDPASEDD IVWVHHSAVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988931e-165BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969362.11e-151PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV7CY911e-134V7CY91_PHAVU; Uncharacterized protein
STRINGGLYMA03G29610.21e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein